rs4184242 SNP Detail

Summary

• ID
  rs4184242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48123724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCAGGC TAGAACTTCC
  AAGAAGATTG AATGGCAGTT AGAGGGCCCT GACCTCAAGG ACTATGAGGC TGGGATCCTT
  GTGGGCAAAG CAAACAGGCA GTCAAGAGGC TGTAGCCCCA CATCAAGAAG CAAAGAAGTC
  AAGGGGAAGA GGGATGTATT GCAATGGTTA GAGTACCCAT CTAACATCCC TGAGACCCTG
  R
  GTTGGGTCCC TTTCGGTGCA TAAACTGGAT GTGGTGACAA ATACCTGTGA TCCCAGCTCC
  TGAGAAGCAG AGGCAGAAGT TGAAGTTCAC CCTTTGTCTC TGCTACATAG TAAGTCAATC
  TAAGCTCCCT GAGACTCCGT CTCAAAACAA AATAGAAACA ACAAAAAAAC AAGTCAGAGG
  CTAGAGGAAA CGGATATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6346460	mCV25059034_45665332	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss39456049	mCV25059034	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148113497	ENSMUSSNP4068617	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4184242					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48123724 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	502 bp upstream
Tssr138651	transcription start site region 138651	553 bp upstream