rs4184243 SNP Detail

Summary

• ID
  rs4184243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48124161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCGAGG CGGATCAATA
  CTTCAAGTCT AGACTGTGCT ACACAGCGAG TTTCCACCTC ATAAAAAAGG GTTTTGTAAC
  ACAAGATGAG GCAATACAAG AGCAAAGTGA CTTCCAGCTG AGTCACTAAA CCAGGGAAGC
  TGGCTTAGTT TTCCTGAGAG GAAGAGGTTT GGCTAGTCAC AATCCTTTGT TTGCAATAAG
  Y
  GTAGCCATTT ATTTGAGCCA ATCACAGTCT TGCCTCGTAG CATCAATCCC AGTGATTGAA
  GCTTGTGTCT TAGACCAGTC ATAACTTTAC CTCTTAACGC CAGGCATCCA TCTGCTAGGG
  CATCTTCAGG TCAGTGCTTC CCCACTGGCC AGGCAGAAAT GATTCCAGAG TCATCTAGAA
  ACCATCAGAC AGGACTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6346461	mCV25059033_45665769	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss39469944	mCV25059033	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148113502	ENSMUSSNP1963995	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4184243					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48124161 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	65 bp upstream
Tssr138651	transcription start site region 138651	116 bp upstream