rs4184245 SNP Detail

Summary

• ID
  rs4184245
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48125032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACACCA GAAGAGGGCA
  TCAGATCTCA TTACAGATAA CTATGAGCCA CCATGTGGTT GCTGGGATTT GAACTCTGGA
  AGAGCAGTCA GTGTTCTTAA CTGCTGAGTC ATCTCTCCAG CCCACTAATG CAAATTTAAA
  GAACTAATGA TAAACACTAA AAATAGTGAA ATTTAGGCAA ATCTTAACAG TGCTTAACCC
  S
  TCAAGTGCTT TGGAAACAGT GGTGTGCACC ATCTCTACCA GTGGGCTATA TCCCTAGCCT
  AATCTATGTG GTTGTTGTTA CTTTGAAATA GGCTCAAATA GGCTTGGGTT ATATTTGGCC
  CAAGCTGATG TGGAACTTGG ATTCATAGCT GAGTACGACT TTGAACTTCA TACTTTGACC
  TGCCCAGCAC TGAGATAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6346463	mCV25059021_45666640	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss39481337	mCV25059021	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss148113512	ENSMUSSNP5214377	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4184245					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48125032 () rs orientation: forward

Symbol	Name	Function Class
Rr516623	regulatory region 516623	323 bp distal
Tssr138650	transcription start site region 138650	773 bp downstream
Tssr138651	transcription start site region 138651	744 bp downstream