rs4184247 SNP Detail

Summary

• ID
  rs4184247
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48125434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTGTCA CTACAAGCTG
  CCCCCCAGCA CACCTGCTTT GCAAGGTGAT GGGGATTGAA GCCAGACCCT CATGCATGCT
  AAGGCAAGCA CCAGGTGAGC TACAGTGCCA GAACCAACCT AGAAATTCTT AACACCAAAA
  TTCAGCTACT TCAAGGAGAC ATGAATTCAT CTTTCTATTC TAGTCTGTTT AACAAACTGT
  W
  CTCTTTCATA GGAAACATCC TGAGGAAAAG CTCCAAATAC AGAAAGAAAG AAAAAAGAGC
  TCATGGCTCA TTTCCCTCCC TCCCTCCCTT CCTCCTTTTA TCTCTTTTCT TTTCTTCTCT
  TCTCTTCTCT TCTCTTCTCT TCTCTTCTCT TCTCTTCTCT TTTCCTTCTT CCTTCCTTCC
  TTCCTTTCTT TTCTTCCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6346465	mCV25059011_45667042	CRAMUS	CRAMUS_MOUSE	f	SNP	A	T	T
ss39453606	mCV25059011	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4184247					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48125434 () rs orientation: forward

Symbol	Name	Function Class
Rr516623	regulatory region 516623	725 bp distal
Tssr138650	transcription start site region 138650	1175 bp downstream
Tssr138651	transcription start site region 138651	1146 bp downstream