rs4184249 SNP Detail

Summary

• ID
  rs4184249
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48125911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCACTG AAGAACATAA
  CCAGGCCAAG AACTCAATGT ATTCTTTCTT TGAGACAGGT CTCACTATGT CATCTTGGGT
  GACCTTATAG ACCAGGCTCG CCTTGAGCTC TCAGAGATTC ATCTGCCTCT GCCTCCAGAG
  TGCTGGGATT AAAGGTCTGT GTCACCACTA TATCCTGCTA TATTTATTTT TAAATACGTA
  W
  TTTTTATTTG TGTGTGTGTG TGTCTGTCTG TCTGTCTGTC TGTCTGTCTT TCTGTTGGTC
  TGTCTGTGTA GTGTGTGCAT AAGCTGGCTC TCATGGAGGC TAGAGGTGTT AGATCCTCAG
  GAGCTAGAGT CACACGTAGA TGATCATGAC CCACCCAACA AGAGTGCTAG GAATCCAAAT
  TTGGTATGCT TTCAACCACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss6346467	mCV25059003_45667520	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss39423057	mCV25059003	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs4184249					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48125911 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	1652 bp downstream
Tssr138651	transcription start site region 138651	1623 bp downstream