rs4184250 SNP Detail

Summary

• ID
  rs4184250
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48126078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATCCTG CTATATTTAT
  TTTTAAATAC GTAATTTTTA TTTGTGTGTG TGTGTGTCTG TCTGTCTGTC TGTCTGTCTG
  TCTTTCTGTT GGTCTGTCTG TGTAGTGTGT GCATAAGCTG GCTCTCATGG AGGCTAGAGG
  TGTTAGATCC TCAGGAGCTA GAGTCACACG TAGATGATCA TGACCCACCC AACAAGAGTG
  M
  TAGGAATCCA AATTTGGTAT GCTTTCAACC ACCAGGGCAT CCCTGTAGAC CTCAGAAATC
  AAGTTTAAAA ATTATGTTTT TAGCCTTGCA TGGTAGATTT TAATATAATA AAGAGAGTCT
  TTAATCCTGC CCTTGGGATG CAGAGGATGG CAAGGGTACA TAGAAAGACC CTGTTATATT
  TGGGGGAGAA AAAGTTATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6346468	mCV25059002_45667687	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss39463642	mCV25059002	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss148113522	ENSMUSSNP1489945	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4184250					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48126078 () rs orientation: forward

Symbol	Name	Function Class
Rr516623	regulatory region 516623	1369 bp distal
Tssr138650	transcription start site region 138650	1819 bp downstream
Tssr138651	transcription start site region 138651	1790 bp downstream