rs4184361 SNP Detail

Summary

• ID
  rs4184361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48812670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA ATTAATAGGT ATTCTAGATA
  Y
  GTGTCACTGA GTTATTTCAC TGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6346579	mCV22326685_46342689	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss39477671	mCV22326685	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss60458510	NES16448034	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		C	T	C	T		T	T	C		C
ss148115653	ENSMUSSNP6468920	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss325174241	CHEV_16_48992420	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4184361					SNP	C	C	T	T	T	C	T	C	T	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458510	NES16448034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48812670 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	1878 bp upstream
Cpgi8305	CpG island 8305	1188 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger	within coordinates
Rr391755	regulatory region 391755	1032 bp upstream
Rr516660	regulatory region 516660	1820 bp distal
Rr516661	regulatory region 516661	114 bp proximal
Rr516662	regulatory region 516662	1624 bp proximal
Rr516663	regulatory region 516663	1892 bp proximal
Tssr138707	transcription start site region 138707	1890 bp upstream
Tssr141318	transcription start site region 141318	1624 bp downstream
Tssr141319	transcription start site region 141319	1774 bp downstream