rs4184983 SNP Detail

Summary

• ID
  rs4184983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGTGAC CTTCTCTAGC
  TCCTCTCAAA GGCTTGTGCA TGGAAGAACC CTGGCCCACA AGTCCAGCCA ACCAGATCCC
  AGTTCCAGGT GTGTTAGTAA GAATATATTC ACAATATTCC TGGCACCAAA TATGTGGAGT
  TGTCCACACC AACAGCCAGT TTCTTCCATC TTGCACATGT CCCCTTGCCC TTCTGACGAG
  Y
  TGTGACTCAG CATAAAGGCC CTGGTCAGAA CAATGAATGC TCTTGGTCTT CTCTGTCAGA
  GCCATGAGCC AAGGAACCTT CTATTGTTTG TCAGTTATCC AGACTGTCAC TCTGTTACCC
  AAACTGTGAA GTTCACCAGA TAGAACATCA GAGAGGGTGG GAAGCCCTGG TTGTCCTCAT
  GGCTAACCCC CACCTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347225	mCV22328109_47113490	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T					T
ss39460125	mCV22328109	ABI	CRAMUS_MOUSE	f	SNP	C	T					T
ss60460825	NES16446478	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184983					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460825	NES16446478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590487 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1316 bp distal
Rr516711	regulatory region 516711	within coordinates
Rr516712	regulatory region 516712	1216 bp proximal
Tssr138713	transcription start site region 138713	488 bp upstream
Tssr141324	transcription start site region 141324	1415 bp upstream
Tssr141325	transcription start site region 141325	1386 bp upstream
Tssr141326	transcription start site region 141326	1345 bp upstream
Tssr141327	transcription start site region 141327	1322 bp upstream
Tssr141328	transcription start site region 141328	302 bp upstream
Tssr141329	transcription start site region 141329	666 bp downstream
Tssr141330	transcription start site region 141330	681 bp downstream
Tssr141331	transcription start site region 141331	694 bp downstream
Tssr141332	transcription start site region 141332	722 bp downstream
Tssr141333	transcription start site region 141333	1557 bp downstream
Tssr141334	transcription start site region 141334	1712 bp downstream