rs4184985 SNP Detail

Summary

• ID
  rs4184985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAGGCC CTGGTCAGAA
  CAATGAATGC TCTTGGTCTT CTCTGTCAGA GCCATGAGCC AAGGAACCTT CTATTGTTTG
  TCAGTTATCC AGACTGTCAC TCTGTTACCC AAACTGTGAA GTTCACCAGA TAGAACATCA
  GAGAGGGTGG GAAGCCCTGG TTGTCCTCAT GGCTAACCCC CACCTGAAAA CCTCAGCACC
  Y
  CTTCATTTAG GGTTTTCTTC TTTTCTTTTC TTTTCTTTTC TTTTCTTTTC CTTTTCTTTT
  CTCTTCTCTT CTTTTCTTTC TTTCTTTTTT TTTTTTGAGG GATTTCATCA TGTAGCCATG
  AAAACCTCAA AGTTCTAGGA AACTGCAAAC TATTTGGAAA CTCTGTGCCA ACCGTTACAG
  CCAAAGGTCA GACTTATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss6347227	mCV22328380_47113701	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	C
ss39419448	mCV22328380	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148122723	ENSMUSSNP7063892	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs4184985					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590698 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1527 bp distal
Rr516711	regulatory region 516711	within coordinates
Rr516712	regulatory region 516712	1005 bp proximal
Tssr138713	transcription start site region 138713	277 bp upstream
Tssr141324	transcription start site region 141324	1626 bp upstream
Tssr141325	transcription start site region 141325	1597 bp upstream
Tssr141326	transcription start site region 141326	1556 bp upstream
Tssr141327	transcription start site region 141327	1533 bp upstream
Tssr141328	transcription start site region 141328	513 bp upstream
Tssr141329	transcription start site region 141329	455 bp downstream
Tssr141330	transcription start site region 141330	470 bp downstream
Tssr141331	transcription start site region 141331	483 bp downstream
Tssr141332	transcription start site region 141332	511 bp downstream
Tssr141333	transcription start site region 141333	1346 bp downstream
Tssr141334	transcription start site region 141334	1501 bp downstream