rs4184986 SNP Detail

Summary

• ID
  rs4184986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGTTTG ATATTCGGAA
  ATTTTGAGAG CTAGGTAACT GTTGATAACT TCCCACCAGC CCATTGTGAG TGTTTACACC
  ACAGGAATAG AAAAATCACT ACAGATCAGA CCGTTAGACA AACAGCCAGT TTACTCACAT
  GCCGCTGACA ACAGCAGTTT AATGTTCTGC ATCGAGATAA GCAACAGTAT TTTAAGGTAC
  R
  TAGTTAAGGT ACATTATTAT CATATTGCTA GTTGAATTAG GCCAGATTTG TAAATTATTC
  TTCAAAAAAA TCAGTCTACA TAAAGCCACT CTGTGTGTCA AATGTGTATC CCCTGAACCA
  TTTTATTGAT ACTATCCCAT GGCCCTTTCT AAATATCACC TTTTACTGCT TCTCAAATCA
  ATAGGCTAAG GCAGCCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347228	mCV22328381_47114455	CRAMUS	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss39463877	mCV22328381	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss60460808	NES16446418	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		G	G	G	G	A	G	G	A	G
ss148122754	ENSMUSSNP343485	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184986					SNP	A	A	G	G	G	A	A	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460808	NES16446418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591427 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	712 bp distal
Rr516712	regulatory region 516712	276 bp proximal
Rr516713	regulatory region 516713	1353 bp proximal
Tssr138713	transcription start site region 138713	441 bp downstream
Tssr138714	transcription start site region 138714	1762 bp upstream
Tssr141328	transcription start site region 141328	1242 bp upstream
Tssr141329	transcription start site region 141329	261 bp upstream
Tssr141330	transcription start site region 141330	247 bp upstream
Tssr141331	transcription start site region 141331	228 bp upstream
Tssr141332	transcription start site region 141332	201 bp upstream
Tssr141333	transcription start site region 141333	617 bp downstream
Tssr141334	transcription start site region 141334	772 bp downstream
Tssr141335	transcription start site region 141335	1706 bp downstream