rs4184987 SNP Detail

Summary

• ID
  rs4184987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCAGAC CGTTAGACAA
  ACAGCCAGTT TACTCACATG CCGCTGACAA CAGCAGTTTA ATGTTCTGCA TCGAGATAAG
  CAACAGTATT TTAAGGTACG TAGTTAAGGT ACATTATTAT CATATTGCTA GTTGAATTAG
  GCCAGATTTG TAAATTATTC TTCAAAAAAA TCAGTCTACA TAAAGCCACT CTGTGTGTCA
  R
  ATGTGTATCC CCTGAACCAT TTTATTGATA CTATCCCATG GCCCTTTCTA AATATCACCT
  TTTACTGCTT CTCAAATCAA TAGGCTAAGG CAGCCCAGGC ATCTTGCTAC AAGGTAGATT
  CAAAGATCAT GCTTGTACAA CTGAAATAAT GTAGAATGCA CAGCTAGTCC AATTATTTGA
  CTATAAAAAA GCTAATTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347229	mCV22328382_47114556	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss39432811	mCV22328382	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss60460807	NES16446420	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		A	A	A	A	G	A	A	G	A
ss148122759	ENSMUSSNP6700794	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184987					SNP	G	G	A	A	A	G	G	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460807	NES16446420	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591528 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	813 bp distal
Rr516712	regulatory region 516712	175 bp proximal
Rr516713	regulatory region 516713	1252 bp proximal
Tssr138713	transcription start site region 138713	542 bp downstream
Tssr138714	transcription start site region 138714	1661 bp upstream
Tssr141328	transcription start site region 141328	1343 bp upstream
Tssr141329	transcription start site region 141329	362 bp upstream
Tssr141330	transcription start site region 141330	348 bp upstream
Tssr141331	transcription start site region 141331	329 bp upstream
Tssr141332	transcription start site region 141332	302 bp upstream
Tssr141333	transcription start site region 141333	516 bp downstream
Tssr141334	transcription start site region 141334	671 bp downstream
Tssr141335	transcription start site region 141335	1605 bp downstream