rs4184988 SNP Detail

Summary

• ID
  rs4184988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGCAGT TTAATGTTCT
  GCATCGAGAT AAGCAACAGT ATTTTAAGGT ACGTAGTTAA GGTACATTAT TATCATATTG
  CTAGTTGAAT TAGGCCAGAT TTGTAAATTA TTCTTCAAAA AAATCAGTCT ACATAAAGCC
  ACTCTGTGTG TCAAATGTGT ATCCCCTGAA CCATTTTATT GATACTATCC CATGGCCCTT
  Y
  CTAAATATCA CCTTTTACTG CTTCTCAAAT CAATAGGCTA AGGCAGCCCA GGCATCTTGC
  TACAAGGTAG ATTCAAAGAT CATGCTTGTA CAACTGAAAT AATGTAGAAT GCACAGCTAG
  TCCAATTATT TGACTATAAA AAAGCTAATT TAGCTCACTG CATCATTGAT CCATTTAATT
  GTACAGCAGC TTCCTATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347230	mCV22328392_47114603	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss39439174	mCV22328392	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss60460806	NES16446421	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C		T	T	T	T	C	T	T	C	T
ss148122763	ENSMUSSNP3218263	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184988					SNP	C	C	T	T	T	C	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460806	NES16446421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591575 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	860 bp distal
Rr516712	regulatory region 516712	128 bp proximal
Rr516713	regulatory region 516713	1205 bp proximal
Tssr138713	transcription start site region 138713	589 bp downstream
Tssr138714	transcription start site region 138714	1614 bp upstream
Tssr141328	transcription start site region 141328	1390 bp upstream
Tssr141329	transcription start site region 141329	409 bp upstream
Tssr141330	transcription start site region 141330	395 bp upstream
Tssr141331	transcription start site region 141331	376 bp upstream
Tssr141332	transcription start site region 141332	349 bp upstream
Tssr141333	transcription start site region 141333	469 bp downstream
Tssr141334	transcription start site region 141334	624 bp downstream
Tssr141335	transcription start site region 141335	1558 bp downstream