rs4184989 SNP Detail

Summary

• ID
  rs4184989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATAAAGC CACTCTGTGT
  GTCAAATGTG TATCCCCTGA ACCATTTTAT TGATACTATC CCATGGCCCT TTCTAAATAT
  CACCTTTTAC TGCTTCTCAA ATCAATAGGC TAAGGCAGCC CAGGCATCTT GCTACAAGGT
  AGATTCAAAG ATCATGCTTG TACAACTGAA ATAATGTAGA ATGCACAGCT AGTCCAATTA
  Y
  TTGACTATAA AAAAGCTAAT TTAGCTCACT GCATCATTGA TCCATTTAAT TGTACAGCAG
  CTTCCTATTG ATAACAGGAA ATAGCCCGAC CCAACTGTGC TGAAAATGGA AATGGCCGGT
  TTTCCATAAC CATAAATTTA AATAAGGATT CTACCTTATG TGTGGAAACT AAAAAGCAAA
  AATCATAACC AAGGTTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347231	mCV22328393_47114732	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C					T		T
ss39461913	mCV22328393	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		T
ss60460805	NES16446423	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T		T	T	T	T	T	T	T	T	T
ss148122770	ENSMUSSNP1181066	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184989					SNP	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460805	NES16446423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591704 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	989 bp distal
Rr516712	regulatory region 516712	within coordinates
Rr516713	regulatory region 516713	1076 bp proximal
Tssr138713	transcription start site region 138713	718 bp downstream
Tssr138714	transcription start site region 138714	1485 bp upstream
Tssr141328	transcription start site region 141328	1519 bp upstream
Tssr141329	transcription start site region 141329	538 bp upstream
Tssr141330	transcription start site region 141330	524 bp upstream
Tssr141331	transcription start site region 141331	505 bp upstream
Tssr141332	transcription start site region 141332	478 bp upstream
Tssr141333	transcription start site region 141333	340 bp downstream
Tssr141334	transcription start site region 141334	495 bp downstream
Tssr141335	transcription start site region 141335	1429 bp downstream