rs4184990 SNP Detail

Summary

• ID
  rs4184990
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TTATGTGTGG AAACTAAAAA
  S
  CAAAAATCAT AACCAAGGTT TGTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6347232	mCV22328394_47114908	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss39484704	mCV22328394	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss148122774	ENSMUSSNP6063628	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4184990					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591880 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	1165 bp distal
Rr516712	regulatory region 516712	within coordinates
Rr516713	regulatory region 516713	900 bp proximal
Tssr138713	transcription start site region 138713	894 bp downstream
Tssr138714	transcription start site region 138714	1309 bp upstream
Tssr141328	transcription start site region 141328	1695 bp upstream
Tssr141329	transcription start site region 141329	714 bp upstream
Tssr141330	transcription start site region 141330	700 bp upstream
Tssr141331	transcription start site region 141331	681 bp upstream
Tssr141332	transcription start site region 141332	654 bp upstream
Tssr141333	transcription start site region 141333	164 bp downstream
Tssr141334	transcription start site region 141334	319 bp downstream
Tssr141335	transcription start site region 141335	1253 bp downstream