rs4184992 SNP Detail

Summary

• ID
  rs4184992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49592469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTACC AGCTCACAGT
  CCAGTGGGAA AGATACACAC ACACACACAC ACACACACAC ACATAAACAC ACACACACAT
  ACACACACAC ACACACACAC ATACACACAC ACACACACAA ACACACACAC ACACACACAC
  ACAGAGTTAA AATGCTTATA ACAGTAAGTT TTATGATAGA CAAACAAACT TTAGTGAGAA
  R
  AATCATTCTA ACTTTGAGAA AACAAAGGAT ATTCATAAGA GTAGAACTGA AAGACGATAG
  GAATCCAATA TCAAGGAAAA TAGCCAGGCA GATAGCAAGA GATGAAATTA TGAAGTTGTG
  AGTGGACATC ATGGGGTCAC AGGGCTGGGT GTTGACAGAA CACTGAAAAA AAAAAAGATA
  AAACAGAGAG ACTTGTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6347234	mCV22328404_47115497	CRAMUS	CRAMUS_MOUSE	f	SNP	G		A
ss39452600	mCV22328404	ABI	CRAMUS_MOUSE	f	SNP	G		A
ss60460802	NES16446396	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	A	A	A	A	A	A
ss148122779	ENSMUSSNP5078296	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4184992					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460802	NES16446396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49592469 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	1727 bp upstream
Rr404848	regulatory region 404848	1865 bp upstream
Rr516711	regulatory region 516711	1754 bp distal
Rr516712	regulatory region 516712	within coordinates
Rr516713	regulatory region 516713	311 bp proximal
Rr516714	regulatory region 516714	1622 bp proximal
Rr516715	regulatory region 516715	1738 bp proximal
Tssr138713	transcription start site region 138713	1483 bp downstream
Tssr138714	transcription start site region 138714	720 bp upstream
Tssr141329	transcription start site region 141329	1303 bp upstream
Tssr141330	transcription start site region 141330	1289 bp upstream
Tssr141331	transcription start site region 141331	1270 bp upstream
Tssr141332	transcription start site region 141332	1243 bp upstream
Tssr141333	transcription start site region 141333	412 bp upstream
Tssr141334	transcription start site region 141334	258 bp upstream
Tssr141335	transcription start site region 141335	664 bp downstream