rs4184994 SNP Detail

Summary

• ID
  rs4184994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGCAAGAT TAGAAACAGT GGTGAGTTCT CTGCACTGTG CTAAATATAT TATTGTTATG
  CTTCAGAATT CAAATGTCCT TTGGAAAGCT GTGTGTTAAA TGCCTGGCCC TCAAATTAAC
  AAGAGGGCTC CATGGAGTAA GAGTGCTTGC TGCCAAGCCT GATAACCCGA GGACAGTCCC
  TAGGACCTGA ATGGTCAAAG GAAAGAGCCA ACTCCTCAGA CCTCTAAACA GTGGCACAAG
  TTGACCCCCA ACACAAACAC ATACACACTA GAGGTGGAGG AGAGAAGAAA GGGGGGGTAG
  R
  TGGAGACAAA GACAGATATA TAGGAAAGCT TGGTCTGAAC CTGACACCTC AGTGGGAGGT
  GTTAGAGCTC TGGAAGGTGA GACCTGGCTA GAGATGAAAG TGTGTTGGTG GTAAGCCTCT
  GAAGTTAGCC TTGACACCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TGTGTGTGTG GGGGGGGGTC TGTTTATGTG TATGCCTGTG TCTCTGTGAG TGTGTCTTTC
  TGTGTGTCTC TCTGTCTGCC TCTTGTGCCC CCTCTATTCT CTCTCCCTCT CTTCCTCTCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss6347236	mCV22328415_47116179	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39471001	mCV22328415	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs4184994					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593149 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	1047 bp upstream
Rr404848	regulatory region 404848	1185 bp upstream
Rr516712	regulatory region 516712	479 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	942 bp proximal
Rr516715	regulatory region 516715	1058 bp proximal
Tssr138714	transcription start site region 138714	40 bp upstream
Tssr141329	transcription start site region 141329	1983 bp upstream
Tssr141330	transcription start site region 141330	1969 bp upstream
Tssr141331	transcription start site region 141331	1950 bp upstream
Tssr141332	transcription start site region 141332	1923 bp upstream
Tssr141333	transcription start site region 141333	1092 bp upstream
Tssr141334	transcription start site region 141334	938 bp upstream
Tssr141335	transcription start site region 141335	1 bp upstream