rs4184995 SNP Detail

Summary

• ID
  rs4184995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATTAAC AAGAGGGCTC
  CATGGAGTAA GAGTGCTTGC TGCCAAGCCT GATAACCCGA GGACAGTCCC TAGGACCTGA
  ATGGTCAAAG GAAAGAGCCA ACTCCTCAGA CCTCTAAACA GTGGCACAAG TTGACCCCCA
  ACACAAACAC ATACACACTA GAGGTGGAGG AGAGAAGAAA GGGGGGGTAG GTGGAGACAA
  R
  GACAGATATA TAGGAAAGCT TGGTCTGAAC CTGACACCTC AGTGGGAGGT GTTAGAGCTC
  TGGAAGGTGA GACCTGGCTA GAGATGAAAG TGTGTTGGTG GTAAGCCTCT GAAGTTAGCC
  CTGACACCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTGTG TGTGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss6347237	mCV22328416_47116189	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	A
ss39466943	mCV22328416	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs4184995					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593159 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	1037 bp upstream
Rr404848	regulatory region 404848	1175 bp upstream
Rr516712	regulatory region 516712	489 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	932 bp proximal
Rr516715	regulatory region 516715	1048 bp proximal
Tssr138714	transcription start site region 138714	30 bp upstream
Tssr141329	transcription start site region 141329	1993 bp upstream
Tssr141330	transcription start site region 141330	1979 bp upstream
Tssr141331	transcription start site region 141331	1960 bp upstream
Tssr141332	transcription start site region 141332	1933 bp upstream
Tssr141333	transcription start site region 141333	1102 bp upstream
Tssr141334	transcription start site region 141334	948 bp upstream
Tssr141335	transcription start site region 141335	11 bp upstream