rs4184996 SNP Detail

Summary

• ID
  rs4184996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGGAGTAAG AGTGCTTGCT GCCAAGCCTG ATAACCCGAG GACAGTCCCT AGGACCTGAA
  TGGTCAAAGG AAAGAGCCAA CTCCTCAGAC CTCTAAACAG TGGCACAAGT TGACCCCCAA
  CACAAACACA TACACACTAG AGGTGGAGGA GAGAAGAAAG GGGGGGTAGG TGGAGACAAA
  GACAGATATA TAGGAAAGCT TGGTCTGAAC CTGACACCTC AGTGGGAGGT GTTAGAGCTC
  TGGAAGGTGA GACCTGGCTA GAGATGAAAG TGTGTTGGTG GTAAGCCTCT GAAGTTAGCC
  Y
  TGACACCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT GTGTGTGTGG
  GGGGGGGTCT GTTTATGTGT ATGCCTGTGT CTCTGTGAGT GTGTCTTTCT GTGTGTCTCT
  CTGTCTGCCT CTTGTGCCCC CTCTATTCTC TCTCCCTCTC TTCCTCTCTT TCAATGGCAC
  AGTGAGGCTT TATCTAGGAT CCCTTCTTCC TCATTATCAT ACCCAGTCAT ATCCAAGACT
  CAGACAAGAG AACAACCACA GATCTCTAAA ACAAAGTGCA ATTTTTTTTT GGGTATAAGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss6347238	mCV22328417_47116310	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C
ss39478719	mCV22328417	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss60460793	NES16446389	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs4184996					SNP	T	T	C	C	C	T	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460793	NES16446389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593280 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	916 bp upstream
Rr404848	regulatory region 404848	1054 bp upstream
Rr516712	regulatory region 516712	610 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	811 bp proximal
Rr516715	regulatory region 516715	927 bp proximal
Tssr138714	transcription start site region 138714	77 bp downstream
Tssr141333	transcription start site region 141333	1223 bp upstream
Tssr141334	transcription start site region 141334	1069 bp upstream
Tssr141335	transcription start site region 141335	132 bp upstream