rs4185124 SNP Detail

Summary

• ID
  rs4185124
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49674452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAGTCAGTA GTCAGCTTTA CAGGGTTAGC TGCATCCAGG AACAGCTGAC AGCCTTTTTT
  AGCCGAGCAG CTGCTCTCTG ATACACAATG TCCCTAACGC TCAAGGTCTG GTGAGCGGTC
  ATTGTTTTGT ATCCATATCA GCATTAACCG GTTCCTTTGA TAGTCGGAGG GTATCTGGTC
  TGCCATTGAA AACCTTAACC ATCAGAACTC TTAAGTCACA TTAACACATC ATCTAGATCA
  ATGGGGGTGG GGGGGAAAGG GAACTTTTGG GGTTTAAAGA ATTGATAATG TGGAGGAAAT
  S
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTTCTCTG ACACACAGAC
  ACACACACAG TTGTATACTA AGGGATGTTT GTTGAGTGCT ATTCTCTGAG CGTAACAGCA
  ATCATGTTCC TCAGAACAGT GGTGACTACT TGTGACTCTC AAGATAGGAT GTGCTGACTG
  TGGATCTTTC CTCCAGGAAG GAGAGTGACA GGAGGGTCAT TGAACCCTTA CTTGAGATTC
  TAGCTACTTC CTCTTGCACC TCTCAGACAC CCCTAAGTAG GTGCTAGAGT ATGCCGACTA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss6347370	mCV23244738_47197094	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C
ss39421640	mCV23244738	ABI	CRAMUS_MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs4185124					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49674452 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	1025 bp proximal
Gm4633	predicted gene 4633	within coordinates
Gm56621	predicted gene, 56621	409 bp upstream
Rr370104	regulatory region 370104	1955 bp upstream
Rr516740	regulatory region 516740	640 bp distal
Rr516741	regulatory region 516741	within coordinates
Rr516742	regulatory region 516742	787 bp proximal
Rr516743	regulatory region 516743	1288 bp proximal
Rr516744	regulatory region 516744	1402 bp proximal
Tssr4899	transcription start site region 4899	1017 bp upstream
Tssr4900	transcription start site region 4900	1171 bp upstream
Tssr4901	transcription start site region 4901	1281 bp upstream
Tssr4902	transcription start site region 4902	1396 bp upstream
Tssr4903	transcription start site region 4903	1678 bp upstream
Tssr138723	transcription start site region 138723	912 bp downstream
Tssr138724	transcription start site region 138724	258 bp upstream
Tssr138725	transcription start site region 138725	448 bp upstream
Tssr138726	transcription start site region 138726	1000 bp upstream
Tssr138727	transcription start site region 138727	1030 bp upstream
Tssr138728	transcription start site region 138728	1260 bp upstream
Tssr138729	transcription start site region 138729	1535 bp upstream
Tssr138730	transcription start site region 138730	1656 bp upstream
Tssr138731	transcription start site region 138731	1983 bp upstream
Tssr141348	transcription start site region 141348	1208 bp downstream
Tssr141349	transcription start site region 141349	1428 bp downstream
Tssr141350	transcription start site region 141350	1743 bp downstream