rs4186580 SNP Detail

Summary

• ID
  rs4186580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51134019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAATGTTTCT TCCTCAGTTA GCTGCAGTTA CGCCTCCAGT GTTTTTGAAT GTTATTGCTT
  AATCTTTACT TTTTTATGAA TTTAGAAATT ACAAGAGAAA TCAATGGAAA AGAAAGCGGT
  TTAGCCACTA GGTGAGGTTA GTGTCTACTT GGCCTTCTTG AGAACCACTT TTAAAACGTA
  TAAGCTTCCA CCACATACAC AAATAAATTT GTACTTTGGA GAAAAGGACT TTATTCAGCA
  TTGTTTGTGA ATTGTGATAC CCTCTCTTTC AACATTGCGT GCACACCATT CTCAAACAAA
  R
  ACATTCTCAA ACAAAAATTT CTGTGCAGTT GGTCACCATG ATACTGTGGA GGGAAGAGGG
  GGGATAGCCT AATACTATGT TCACAAAAAA AATATGAAGC ATATTTGTTC TCTAAACATT
  TTTGTTACTG CTGAAATATT GGAGCCACAC GCTAATTTTT CCTTCCATAA TAACCTCCTA
  TAAAGTACTA GAAACTTCCA GCACTTGGTT CTTTAGAAAA TGGGTACTAA CAAGGTAACA
  AGGTTGTATT TGTTCTGTGT TGTTTTGTTG TATCTTTTAA TTGTTGAGGA TGCTAATCTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6348851	mCV24635319_48644917	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss39460541	mCV24635319	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4186580					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51134019 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	1649 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	1937 bp upstream
Rr516901	regulatory region 516901	1965 bp proximal