rs4186581 SNP Detail

Summary

• ID
  rs4186581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51134020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATGTTTCTT CCTCAGTTAG CTGCAGTTAC GCCTCCAGTG TTTTTGAATG TTATTGCTTA
  ATCTTTACTT TTTTATGAAT TTAGAAATTA CAAGAGAAAT CAATGGAAAA GAAAGCGGTT
  TAGCCACTAG GTGAGGTTAG TGTCTACTTG GCCTTCTTGA GAACCACTTT TAAAACGTAT
  AAGCTTCCAC CACATACACA AATAAATTTG TACTTTGGAG AAAAGGACTT TATTCAGCAT
  TGTTTGTGAA TTGTGATACC CTCTCTTTCA ACATTGCGTG CACACCATTC TCAAACAAAA
  W
  CATTCTCAAA CAAAAATTTC TGTGCAGTTG GTCACCATGA TACTGTGGAG GGAAGAGGGG
  GGATAGCCTA ATACTATGTT CACAAAAAAA ATATGAAGCA TATTTGTTCT CTAAACATTT
  TTGTTACTGC TGAAATATTG GAGCCACACG CTAATTTTTC CTTCCATAAT AACCTCCTAT
  AAAGTACTAG AAACTTCCAG CACTTGGTTC TTTAGAAAAT GGGTACTAAC AAGGTAACAA
  GGTTGTATTT GTTCTGTGTT GTTTTGTTGT ATCTTTTAAT TGTTGAGGAT GCTAATCTGA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6348852	mCV24635329_48644918	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss39472165	mCV24635329	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4186581					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51134020 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	1648 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	1936 bp upstream
Rr516901	regulatory region 516901	1964 bp proximal