rs4186582 SNP Detail

Summary

• ID
  rs4186582
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51134021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTTTCTTC CTCAGTTAGC TGCAGTTACG CCTCCAGTGT TTTTGAATGT TATTGCTTAA
  TCTTTACTTT TTTATGAATT TAGAAATTAC AAGAGAAATC AATGGAAAAG AAAGCGGTTT
  AGCCACTAGG TGAGGTTAGT GTCTACTTGG CCTTCTTGAG AACCACTTTT AAAACGTATA
  AGCTTCCACC ACATACACAA ATAAATTTGT ACTTTGGAGA AAAGGACTTT ATTCAGCATT
  GTTTGTGAAT TGTGATACCC TCTCTTTCAA CATTGCGTGC ACACCATTCT CAAACAAAAA
  S
  ATTCTCAAAC AAAAATTTCT GTGCAGTTGG TCACCATGAT ACTGTGGAGG GAAGAGGGGG
  GATAGCCTAA TACTATGTTC ACAAAAAAAA TATGAAGCAT ATTTGTTCTC TAAACATTTT
  TGTTACTGCT GAAATATTGG AGCCACACGC TAATTTTTCC TTCCATAATA ACCTCCTATA
  AAGTACTAGA AACTTCCAGC ACTTGGTTCT TTAGAAAATG GGTACTAACA AGGTAACAAG
  GTTGTATTTG TTCTGTGTTG TTTTGTTGTA TCTTTTAATT GTTGAGGATG CTAATCTGAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6348853	mCV24635330_48644919	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss39424725	mCV24635330	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4186582					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51134021 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	1647 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	1935 bp upstream
Rr516901	regulatory region 516901	1963 bp proximal