rs4186583 SNP Detail

Summary

• ID
  rs4186583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51134753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TTGAAGCGGC TTTCCTCTAT
  R
  GGCTATGCTA TGATCGATTC ATAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6348854	mCV24635331_48645651	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss39442128	mCV24635331	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss60462117	NES16447879	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G		G	G		A
ss148137413	ENSMUSSNP7103818	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss325177487	CHEV_16_51314503	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4186583					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60462117	NES16447879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51134753 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	915 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	1203 bp upstream
Rr516901	regulatory region 516901	1231 bp proximal
Rr516902	regulatory region 516902	1340 bp proximal
Rr516903	regulatory region 516903	1455 bp proximal