rs4186585 SNP Detail

Summary

• ID
  rs4186585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51135639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGAGGA TGCTCGTGCA
  GAGTAGAAAT ACCCTTCCCT TAGGTCTCTG GGACATCAGG AAAGATGTTT TACCTTTAAA
  GATGTACTGT TAACAGCCTC CATTCAGCTT GGACAGGACC AGCTTCCACT GTCAGAGTGT
  TCTCAAGCTG ATGGTTTTGC CTATTTATTT ATGCTTCCGG ACAAAAAGAA TAGATCCATA
  R
  ATGTTTAGCG ATTGAATTAA TCATTCCATT AATGAAAACA GTTCACATTC ACGTTTATTT
  CAAGACAATT ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACAGGCCC
  AGATACAGAG AATGCACTTG CATCTATATT ACACTTGCTT ATATATAGGG AGGAGAAAGA
  GGAGGAGGAA GAAGAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6348856	mCV24635342_48646537	CRAMUS	CRAMUS_MOUSE	f	SNP		A	G
ss39423451	mCV24635342	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss60462109	NES16447913	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G		G	G	G		A
ss148137422	ENSMUSSNP3293170	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss325177489	CHEV_16_51315389	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4186585					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60462109	NES16447913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51135639 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	29 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	317 bp upstream
Rr516901	regulatory region 516901	345 bp proximal
Rr516902	regulatory region 516902	454 bp proximal
Rr516903	regulatory region 516903	569 bp proximal