rs4188156 SNP Detail

Summary

• ID
  rs4188156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55794031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC TGAGGACCCC CGTATCTGCC
  S
  GAGAGAGCGC GTTCCCTCTT CCAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6350449	mCV23432508_53288741	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss39459264	mCV23432508	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss325189947	CHEV_16_55973781	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4188156					SNP	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55794031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	within coordinates
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	within coordinates
Rr517154	regulatory region 517154	1069 bp distal
Rr517155	regulatory region 517155	within coordinates
Rr517156	regulatory region 517156	570 bp distal
Rr517157	regulatory region 517157	55 bp proximal
Rr517158	regulatory region 517158	270 bp proximal
Rr517159	regulatory region 517159	939 bp proximal
Tssr138799	transcription start site region 138799	118 bp upstream
Tssr138800	transcription start site region 138800	143 bp upstream
Tssr138801	transcription start site region 138801	169 bp upstream
Tssr138802	transcription start site region 138802	213 bp upstream
Tssr138803	transcription start site region 138803	1504 bp upstream
Tssr141546	transcription start site region 141546	845 bp downstream
Tssr141547	transcription start site region 141547	873 bp downstream
Zbtb11	zinc finger and BTB domain containing 11	215 bp upstream
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	within coordinates