rs4188157 SNP Detail

Summary

• ID
  rs4188157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55795680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGC CTTGAGTTAA GGATCTGAGT
  R
  CCTCACTAGC TGGGATTACA GACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6350450	mCV23432509_53290390	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss39481381	mCV23432509	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4188157					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55795680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	487 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	1456 bp downstream
Tssr138799	transcription start site region 138799	1517 bp downstream
Tssr138800	transcription start site region 138800	1487 bp downstream
Tssr138801	transcription start site region 138801	1453 bp downstream
Tssr138802	transcription start site region 138802	1425 bp downstream
Tssr138803	transcription start site region 138803	110 bp downstream
Tssr141546	transcription start site region 141546	792 bp upstream
Tssr141547	transcription start site region 141547	710 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	700 bp upstream