rs4188158 SNP Detail

Summary

• ID
  rs4188158
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55796718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC ACCAACAACA ACAACAAAAA
  M
  AACCCTGAAT TAAGCCAGGC CTATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss6350453	mCV23432520_53291428	CRAMUS	CRAMUS_MOUSE	f	SNP	C	A
ss39467752	mCV23432520	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss148157719	ENSMUSSNP6159205	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs4188158					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55796718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	1525 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr517159	regulatory region 517159	1248 bp distal
Tssr138803	transcription start site region 138803	1148 bp downstream
Tssr141546	transcription start site region 141546	1830 bp upstream
Tssr141547	transcription start site region 141547	1748 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	1738 bp upstream