rs4188258 SNP Detail

Summary

• ID
  rs4188258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55968898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGAAATT CAAAACATTT
  TAGTGGTGAT TGGCATAGGC TTCCAAAATG ATGCTTTTTA CTTAAAAAGG AAGTTCTTCA
  CTGCAGAATG GTGGGTTTAC TGGGTGCTTA GATTGGGAGA GTTTTGATTA AAAGAAGAAA
  CAAACCATCA AGCATATTTA TATTCTTGTA AATGACCACA TTCCAGAGAG AGTTGTTGAG
  R
  AAAGACAGTT TGGCTTCTTT TCAAAGAACA GCAATCATAA TTTTACTCTT AATTTTAATG
  CCTTTACTTT TAAGTTAAAA ATATTGTGAC CAGTTTTAAA AATAGTGGTG AATCACACAG
  ACTTTTGTTT TTTAGTTTAA TGTATTTTAA TAGCAAACTT ACAGGAACAG CACAGAAGAC
  AGACAACATT AAAAGCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6350555	mCV24017069_53457454	CRAMUS	CRAMUS_MOUSE	f	SNP	A		G					G		G
ss39425614	mCV24017069	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss60465502	NES16460781	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148158609	ENSMUSSNP4679451	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4188258					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60465502	NES16460781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55968898 () rs orientation: forward

Symbol	Name	Function Class
Gm49682	predicted gene, 49682	631 bp downstream
Rr318787	regulatory region 318787	498 bp distal
Rr318788	regulatory region 318788	703 bp proximal
Senp7	SUMO1/sentrin specific peptidase 7	within coordinates