rs4189346 SNP Detail

Summary

• ID
  rs4189346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57173515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT CAGTGGAGAC TGGCAAAGCT
  R
  TGGGGTGAGC ATTTCGGCAA GGTCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6351666	mCV25106002_54679504	CRAMUS	CRAMUS_MOUSE	f	SNP	A		G	A
ss39467677	mCV25106002	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148173004	ENSMUSSNP5698749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325201087	CHEV_16_57353265	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4189346					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57173515 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	within coordinates
Rr517288	regulatory region 517288	within coordinates
Rr517289	regulatory region 517289	886 bp proximal
Tssr138825	transcription start site region 138825	370 bp downstream
Tssr138826	transcription start site region 138826	327 bp downstream
Tssr138827	transcription start site region 138827	150 bp downstream
Tssr138828	transcription start site region 138828	117 bp downstream
Tssr138829	transcription start site region 138829	35 bp downstream
Tssr138830	transcription start site region 138830	86 bp upstream
Tssr138831	transcription start site region 138831	119 bp upstream
Tssr138832	transcription start site region 138832	144 bp upstream
Tssr141601	transcription start site region 141601	within coordinates
Tssr141602	transcription start site region 141602	28 bp downstream