rs4199574 SNP Detail

Summary

• ID
  rs4199574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70110135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA AATCTGTATT CTTAAAAAAA
  W
  ATTTTTTTGT ATGTCTGTGT ATCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6362037	mCV23187969_67561274	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	T
ss39443368	mCV23187969	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss148299038	ENSMUSSNP4215739	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325235744	CHEV_16_70313492	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4199574					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70110135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	589 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	702 bp upstream
Rr517848	regulatory region 517848	212 bp proximal
Tssr138939	transcription start site region 138939	720 bp upstream
Tssr138940	transcription start site region 138940	751 bp upstream
Tssr138941	transcription start site region 138941	764 bp upstream
Tssr138942	transcription start site region 138942	810 bp upstream
Tssr138943	transcription start site region 138943	844 bp upstream
Tssr138944	transcription start site region 138944	872 bp upstream
Tssr138945	transcription start site region 138945	1230 bp upstream
Tssr138946	transcription start site region 138946	1420 bp upstream