rs4199576 SNP Detail

Summary

• ID
  rs4199576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70111864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA AAGTAGCTAG TATATAAATT
  R
  GAGTAGTTAT GAGTCGATTG CAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6362039	mCV22841811_67563016	CRAMUS	CRAMUS_MOUSE	f	SNP		G	A	G
ss39476928	mCV22841811	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148299053	ENSMUSSNP5492027	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325235760	CHEV_16_70315221	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4199576					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70111864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	277 bp distal
Gbe1	1,4-alpha-glucan branching enzyme 1	within coordinates
Rr517848	regulatory region 517848	902 bp distal
Rr517849	regulatory region 517849	894 bp proximal
Tssr138939	transcription start site region 138939	1000 bp downstream
Tssr138940	transcription start site region 138940	973 bp downstream
Tssr138941	transcription start site region 138941	960 bp downstream
Tssr138942	transcription start site region 138942	905 bp downstream
Tssr138943	transcription start site region 138943	880 bp downstream
Tssr138944	transcription start site region 138944	827 bp downstream
Tssr138945	transcription start site region 138945	478 bp downstream
Tssr138946	transcription start site region 138946	296 bp downstream
Tssr138947	transcription start site region 138947	772 bp upstream