rs4202859 SNP Detail

Summary

• ID
  rs4202859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73259646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAATTT CCCCATTTCT
  AAAGAGTTTC TTTATCAAGA CCTCTCAGAG TGAAACAATG TTAACCACAC TCAACAGAGG
  CTGGATATAG GATCTTGCAC CTGTAGGTCA GCGGTTCAAA TCTGGCCTGG ATCAGCCATG
  ACTGAAAGTC ATTACCAGTG GGTGGTTTCA TAATGTTCTC AATAAATGAG CCATCACACC
  R
  GCTTACACTC TGCCAGCAGT CAAGGGCCCC AGTGACAAAT CATGTCACCA CAAGCACAAC
  ACACCCTTGA TCACACTGAT ACGAAATAAC TACAAAAAAT CGATGTTAAA TTTCCTCAAA
  ATTTACTGAA GAAAAAACCA TGCAGCATCC TCAGTATACA AATGTGTTAT TGTATAACCA
  GAGTTTGTTC ACTCGGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6365386	mCV22548861_70720104	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss39421613	mCV22548861	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss325246928	CHEV_16_73463003	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4202859					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73259646 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	1049 bp downstream
Rr518000	regulatory region 518000	within coordinates