rs4202860 SNP Detail

Summary

• ID
  rs4202860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73259862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCAAGG GCCCCAGTGA
  CAAATCATGT CACCACAAGC ACAACACACC CTTGATCACA CTGATACGAA ATAACTACAA
  AAAATCGATG TTAAATTTCC TCAAAATTTA CTGAAGAAAA AACCATGCAG CATCCTCAGT
  ATACAAATGT GTTATTGTAT AACCAGAGTT TGTTCACTCG GATGTTTTAT AATCTGATGA
  R
  TACAGACCTA TGAGATGATA CTACCTAAAT TAGATTTTTA TATTACTCAT GACACGCTTT
  GATATGCTTG AGGCATCTAC TTTTTTTGAT ATGGAAGTGT TTATTTAATT TATAAATGTA
  TGTCAATGTG TGCCATGATC TTGTTGGAAA ACTATGTTTT CTTTTTTGTA TTCCATTCTT
  ATTCCAAACA GCTGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6365387	mCV22548862_70720320	CRAMUS	CRAMUS_MOUSE	f	SNP		A	G	G
ss39416710	mCV22548862	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss148341198	ENSMUSSNP326362	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4202860					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73259862 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	833 bp downstream
Rr518000	regulatory region 518000	108 bp distal