rs4202861 SNP Detail

Summary

• ID
  rs4202861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73259961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAATTT ACTGAAGAAA
  AAACCATGCA GCATCCTCAG TATACAAATG TGTTATTGTA TAACCAGAGT TTGTTCACTC
  GGATGTTTTA TAATCTGATG AGTACAGACC TATGAGATGA TACTACCTAA ATTAGATTTT
  TATATTACTC ATGACACGCT TTGATATGCT TGAGGCATCT ACTTTTTTTG ATATGGAAGT
  R
  TTTATTTAAT TTATAAATGT ATGTCAATGT GTGCCATGAT CTTGTTGGAA AACTATGTTT
  TCTTTTTTGT ATTCCATTCT TATTCCAAAC AGCTGGAGAG GAAATCAGAG ATACAATAAT
  TCTAAACATT TAAAAACTTT TCTCTCCTTG TTATTCCCTA GGAAATGCAT TTGATAATGA
  TATCATATGC ATTGGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6365388	mCV22548897_70720419	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39435526	mCV22548897	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148341201	ENSMUSSNP1187578	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4202861					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73259961 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	734 bp downstream
Rr518000	regulatory region 518000	207 bp distal