rs4202863 SNP Detail

Summary

• ID
  rs4202863
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73260458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAACTTG AAAAGGGTCC
  TTGTTTCACA TTTTTTTATG GCTGAAAAAT CTCTTCATTC CCTCTTAAAG CAATATAACA
  AAACATACAG TAGATTGTAT ACTTTTAGCT GAACATAAGC ATTATCTTTT TATATATACA
  TTTCATTGGA ACTTTGCCAC ATTGCTATCT TGTCCTACTA GTAAAAGTGG GTAGTTCTTC
  W
  GCATTAACCT CTTTCAAGAA TAGGGGTACC ATAACAGATA ATGAAAGTAT AAACTTTGGG
  GCCAGGAAAT AGAGAATTGC CACACGCAAG TGAATTTAAT TTTCTTTTCC AGTACAAAAT
  ATCTCTGCTG TCTCAGAGGT AACATTATTA ATAATAAGGT CTTGCAATGT AACTCACACA
  AGTCTGTTAG TGCTTTAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6365390	mCV22548899_70720916	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39425807	mCV22548899	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148341211	ENSMUSSNP3974497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325246931	CHEV_16_73463815	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4202863					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73260458 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	237 bp downstream
Rr518000	regulatory region 518000	704 bp distal