rs4202866 SNP Detail

Summary

• ID
  rs4202866
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73262184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GATGGGGTGT GACAATCATT
  S
  TTTTCATGTC TTTTTTTTTT AACAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6365393	mCV22549090_70722642	CRAMUS	CRAMUS_MOUSE	f	SNP		C	G						G									C
ss16382051	16.073.905	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	G	C	C	C	C	C	G	G	G	G	G	G	C	G	C	C	G	C	C	G	C	C	G	C	C	C	C	G	G	C	G	G	G	C	C	G	G
ss39458362	mCV22549090	ABI	CRAMUS_MOUSE	f	SNP		C	G						G									C
ss60238201	NES15738956	PERLEGEN	MM_PANEL2	f	SNP	C		G		C	C		C						G				C		C		G				C			C									G
ss148341238	ENSMUSSNP1151618	ENSEMBL	ENSEMBL_Sanger	f	SNP			G															C
ss325246939	CHEV_16_73465541	CHEVERUD	SCREENING_POP	f	SNP																							C												G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4202866					SNP	C	C	G	C	C	C	C	C	G	G	G	G	G	G	C	G	C	C	G	C	C	G	C	C	G	C	C	C	C	G	G	C	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60238201	NES15738956	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73262184 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	473 bp upstream