rs4204206 SNP Detail

Summary

• ID
  rs4204206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74076571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG AGATTTAGTT TTATTTTGCG
  Y
  TCTGCTCTCT TCCTTCCAGG ACCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6366756	mCV25126592_71513015	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss39482284	mCV25126592	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss48300705	NES12220063	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	T	T	T		T	T	C		C
ss148351793	ENSMUSSNP790942	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss325248282	CHEV_16_74279928	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4204206					SNP	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48300705	NES12220063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74076571 () rs orientation: forward

Symbol	Name	Function Class
Robo2	roundabout guidance receptor 2	within coordinates
Tssr141729	transcription start site region 141729	477 bp upstream
Tssr141730	transcription start site region 141730	330 bp upstream
Tssr141731	transcription start site region 141731	229 bp upstream
Tssr141732	transcription start site region 141732	213 bp upstream
Tssr141733	transcription start site region 141733	40 bp upstream
Tssr141734	transcription start site region 141734	54 bp downstream