rs4204413 SNP Detail

Summary

• ID
  rs4204413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74207261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GAGCCTCGCC CAGTCTCACT
  W
  GTGACAGTTT TCTCTCTGTG ATCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6366978	mCV23010457_71643760	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss39460576	mCV23010457	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss148354292	ENSMUSSNP22999	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325248756	CHEV_16_74410618	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4204413					SNP	A	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74207261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	971 bp proximal
Robo2	roundabout guidance receptor 2	within coordinates
Rr319101	regulatory region 319101	1461 bp distal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	1042 bp downstream
Tssr141738	transcription start site region 141738	1071 bp downstream
Tssr141739	transcription start site region 141739	1134 bp downstream
Tssr141740	transcription start site region 141740	1194 bp downstream
Tssr141741	transcription start site region 141741	1345 bp downstream
Tssr141742	transcription start site region 141742	1403 bp downstream
Tssr141743	transcription start site region 141743	1428 bp downstream
Tssr141744	transcription start site region 141744	1434 bp downstream
Tssr141745	transcription start site region 141745	1493 bp downstream
Tssr141746	transcription start site region 141746	1743 bp downstream