rs4204414 SNP Detail

Summary

• ID
  rs4204414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74208268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CGGGTTTTTC TCCCCTTGGT
  Y
  TCCTCCGTAG CAGCACCACT TCGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6366979	mCV23010447_71644767	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss39472083	mCV23010447	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148354296	ENSMUSSNP3180812	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss325248757	CHEV_16_74411625	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4204414					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74208268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	within coordinates
Robo2	roundabout guidance receptor 2	within coordinates
Rr319102	regulatory region 319102	1933 bp proximal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	35 bp downstream
Tssr141738	transcription start site region 141738	64 bp downstream
Tssr141739	transcription start site region 141739	127 bp downstream
Tssr141740	transcription start site region 141740	187 bp downstream
Tssr141741	transcription start site region 141741	338 bp downstream
Tssr141742	transcription start site region 141742	396 bp downstream
Tssr141743	transcription start site region 141743	421 bp downstream
Tssr141744	transcription start site region 141744	427 bp downstream
Tssr141745	transcription start site region 141745	486 bp downstream
Tssr141746	transcription start site region 141746	736 bp downstream