rs4204415 SNP Detail

Summary

• ID
  rs4204415
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74208437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC CAAAAGGAAG GAAAAGGGGA
  M
  GGCAGGACGG CTTGGGTGGA GAATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6366980	mCV23010446_71644936	CRAMUS	CRAMUS_MOUSE	f	SNP	C	A	C
ss39466842	mCV23010446	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss148354302	ENSMUSSNP3552775	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325248758	CHEV_16_74411794	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4204415					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74208437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	within coordinates
Robo2	roundabout guidance receptor 2	within coordinates
Rr319102	regulatory region 319102	1764 bp proximal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	119 bp upstream
Tssr141738	transcription start site region 141738	98 bp upstream
Tssr141739	transcription start site region 141739	6 bp upstream
Tssr141740	transcription start site region 141740	18 bp downstream
Tssr141741	transcription start site region 141741	169 bp downstream
Tssr141742	transcription start site region 141742	227 bp downstream
Tssr141743	transcription start site region 141743	252 bp downstream
Tssr141744	transcription start site region 141744	258 bp downstream
Tssr141745	transcription start site region 141745	317 bp downstream
Tssr141746	transcription start site region 141746	567 bp downstream