rs4205779 SNP Detail

Summary

• ID
  rs4205779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:75562929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAATATGT AAACTTCCCG AAGGCAAGTT CTAGTCACCA
  TTGAATAGTA CGGCCCATGA AGAGCAGAGG CTCAGCAAAT ATTTAAGGGA AAAGATCATA
  K
  AGAAACATCA GGCATATTGT ACACAAAAGC GAATAAGAAC ATCACTTTGA GTTTAGAATT
  AATATCTGAT TTGGTTTCAC TAGTCTGCGT AATACACCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6368355	mCV24099972_72985689	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss39475211	mCV24099972	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss148372266	ENSMUSSNP2788355	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss325251663	CHEV_16_75766286	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4205779					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75562929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54792	predicted gene, 54792			1610 bp downstream
Hspa13	heat shock protein 70 family, member 13			Intron
				Noncoding-Transcript-Variant
Rr404916	regulatory region 404916			973 bp upstream
Rr404917	regulatory region 404917			1871 bp upstream
Rr518111	regulatory region 518111			within coordinates
Rr518112	regulatory region 518112			740 bp proximal
Rr518113	regulatory region 518113			748 bp proximal
Tssr141799	transcription start site region 141799			717 bp downstream
Tssr141800	transcription start site region 141800			1032 bp downstream