rs4205784 SNP Detail

Summary

• ID
  rs4205784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCGGCCTC CCCACGCACG AAGGCCCAAC AAACCAGGCT
  TTGTTGTGGG AGCAGCGTCT GGGAAAGGCC AGAGTTTGTC ATTCATCAAA CCCAAAACGC
  Y
  GCGAGCTTAC TCGCGGTTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAGTC CCTGTAGCCC
  CGCCTCACCG CGTTGTATTG TGGGAACTGC AGTTCTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6368360	mCV24099984_72986705	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C
ss39477294	mCV24099984	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148372291	ENSMUSSNP5371679	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325251669	CHEV_16_75767302	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4205784					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	48 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1745 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	within coordinates
Rr404917	regulatory region 404917	855 bp upstream
Tssr141799	transcription start site region 141799	260 bp upstream
Tssr141800	transcription start site region 141800	16 bp downstream