rs4206325 SNP Detail

Summary

• ID
  rs4206325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76168996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACATGTGT CAGACTCTCT GCCTGTCCGC CTTTTAAACA
  CAGTGGATTC CTTTGTTCCT TCAGTCTGAA TATCAACTCC TGATTAAAAT TTGGAAAGTA
  Y
  TTTGGAAAGG GATAGGAGGG TCTGGGGAAT GTTTGCACGC TAGAGGGTTT CTTCTAACAA
  CAATAGTATT AAAGGAGGAC AGTGGCACCA GAGAGGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6368903	mCV24673371_73581409	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T
ss39416380	mCV24673371	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148378999	ENSMUSSNP5094139	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4206325					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76168996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	within coordinates
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	989 bp upstream
Tssr139018	transcription start site region 139018	1085 bp upstream
Tssr141820	transcription start site region 141820	906 bp downstream
Tssr141821	transcription start site region 141821	1731 bp downstream
Tssr141822	transcription start site region 141822	1746 bp downstream
Tssr141823	transcription start site region 141823	1764 bp downstream