rs4206327 SNP Detail

Summary

• ID
  rs4206327
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76171265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGACTTG TGGTTGCAGA AGTTGTTTTT GTTTGACATT
  AAAAAAAAAA AAAAAAGGCT AAAGTACATC TTCGATTCAC CCTAAACTCT GAAGTGCTAT
  S
  CCTGCCTTAA AATACTTACT AAGACAATTT TGTGGATGAA GCTTTCTACT CTCATATGTT
  TTCATATCCT TAAGAATTTC GGTAGCATTT GGAAGCAGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss6368905	mCV25279108_73583873	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C		G
ss8792828	WI_WGS_16_76918124	WI	MOUSE	f	SNP		C	G
ss39446592	mCV25279108	ABI	CRAMUS_MOUSE	f	SNP	G	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs4206327					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76171265 () rs orientation: forward

Symbol	Name	Function Class
Nrip1	nuclear receptor interacting protein 1	550 bp upstream
Rr518182	regulatory region 518182	1914 bp distal
Rr518183	regulatory region 518183	838 bp distal
Rr518184	regulatory region 518184	60 bp distal
Tssr139017	transcription start site region 139017	1270 bp downstream
Tssr139018	transcription start site region 139018	1164 bp downstream
Tssr141820	transcription start site region 141820	1274 bp upstream
Tssr141821	transcription start site region 141821	525 bp upstream
Tssr141822	transcription start site region 141822	506 bp upstream
Tssr141823	transcription start site region 141823	491 bp upstream