rs4206572 SNP Detail

Summary

• ID
  rs4206572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76343825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCATACCA TCACAGGGCT
  GGGTGTCTAT CACTTTAAGG GATCCAGGTG CTGAAGTTAC ACCCTATTCT TTGTTCTGGT
  ACATATGATA AGCACTTGGG CCTGGTTTCA CTGATATGAT TTTAATACAC CCAGGTGCTC
  CAATAGTTTC AGTTCACCCC CAGTAAACTT AGAGGGTGGC TCCGTTTCTA CTTCCAGGAA
  Y
  AAATGATTTA TATTTATAAG CCTGTGTTGG TGGTTGGTGC AGTACAGACA GTATAGCTTC
  TGGGGCCATC CAGGGGCTAA AGTCATCCTT CTCTCTCAAA ATGGAGTCTT CTAGAGCAAT
  GAAGAGCCTG GAAAAACATT TGTTTTGAAA TACAATATGG AGTAACTTAC GTAGCCTGAT
  CGCTATACCT GAGGACATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss6369152	mCV22556447_73756339	CRAMUS	CRAMUS_MOUSE	f	SNP		C	T				T		T
ss39458003	mCV22556447	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		T
ss48305239	NES12209802	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T		C	T	T	T	C	T	C	C
ss148381273	ENSMUSSNP6354434	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs4206572					SNP	C	C	T	T	C	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305239	NES12209802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76343825 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	1858 bp upstream
Tssr139022	transcription start site region 139022	1806 bp upstream