rs4206573 SNP Detail

Summary

• ID
  rs4206573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76344412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTGGG GGCATTTTAT
  AACCACTGGG TCCTATTCCT TGTGCTGGAC AGAACTCTGA AGCCAGAGAG TAACAGCCTA
  CGTTCTACTG TGAACTTGAA ACCTGTAGGT TCCGGATGAA CTATGGGCCC ACTTAAATAA
  AAGCTAGGAT TCATTCTGTG GTGGATTCTG TGATTCCTGG ATCCAAAGAC CTGATTCCAG
  R
  TTAACTCTGC AAGCCCTAGA GTTAAAACTG ATTTGGGGGG ATGGAGTGGG GTGGGTAATT
  ACTGGAACAG TGGATGTCAA AGTTTTGGTA CTTTGAGAAA GCTGTGATTC AAACCCTTCT
  TCCTGGGAAC TCTGTGGTTT CTGGAGTCAA AGGCCAAGTG CTGCTATGCA CACACTGGCT
  ACTTCTGTAG CCAAAGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6369153	mCV22556448_73756926	CRAMUS	CRAMUS_MOUSE	f	SNP	A						G	G
ss39452192	mCV22556448	ABI	CRAMUS_MOUSE	f	SNP	A	G					G	G
ss48305232	NES12209816	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G		G	G	G	G	G	G	G
ss148381278	ENSMUSSNP5532112	ENSEMBL	ENSEMBL_Sanger	f	SNP	A							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4206573					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305232	NES12209816	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76344412 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	1271 bp upstream
Tssr139022	transcription start site region 139022	1219 bp upstream