rs4206575 SNP Detail

Summary

• ID
  rs4206575
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76344640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTTGGG GGGATGGAGT
  GGGGTGGGTA ATTACTGGAA CAGTGGATGT CAAAGTTTTG GTACTTTGAG AAAGCTGTGA
  TTCAAACCCT TCTTCCTGGG AACTCTGTGG TTTCTGGAGT CAAAGGCCAA GTGCTGCTAT
  GCACACACTG GCTACTTCTG TAGCCAAAGC CTTGGTTTTA TGTCTAACTC TGGTACCTCT
  S
  GAACTAAAAA GCCTTGGTCC TGCAGCAAAC CCTAAACCCT GCAACACCCT GAGCCAAAGA
  CTGGTCCCTT GGTGAACTGC ATACCAGGGA AACACTTCGA TTGCTGGACT GGCTTCAAAG
  AAATTGAGAA ACTACCTTTG AAAAATGGAG CTGTAACTCA TTGGGGAATA TGATCAAAGT
  CAGCATGGAA GCCCCACCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss6369155	mCV22556456_73757154	CRAMUS	CRAMUS_MOUSE	f	SNP	G					C		C
ss39458209	mCV22556456	ABI	CRAMUS_MOUSE	f	SNP	G					C		C
ss48305229	NES12209821	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		G	C	C	C	G	C	C	C
ss148381286	ENSMUSSNP3511543	ENSEMBL	ENSEMBL_Sanger	f	SNP	G							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs4206575					SNP	G	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305229	NES12209821	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76344640 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	1043 bp upstream
Rr370111	regulatory region 370111	1864 bp upstream
Rr518205	regulatory region 518205	1907 bp proximal
Tssr139022	transcription start site region 139022	991 bp upstream