rs4207194 SNP Detail

Summary

• ID
  rs4207194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77125157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCGCATG CCTGTGCAGT TACTTAGTAA ATAGGGTGAA
  GGATGGAGTG TTGGGCATCT ATCTCTATCT CTGAGTGACA GCTACTGGGA GAGGGAGGGT
  K
  TCTAATCTAA TCACTGTAGA AACATGAGCA TTTTAATTTG GTTGGATCAT TCAAAGAAAG
  GGTTTGCTTT GAAGTACAAT TACTTGATAC TTCCTTGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369788	mCV25161213_74553818	CRAMUS	CRAMUS_MOUSE	f	SNP	G	T
ss39420509	mCV25161213	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss148391571	ENSMUSSNP5189298	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325255101	CHEV_16_77328514	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207194					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77125157 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	within coordinates
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	1059 bp upstream
Rr518272	regulatory region 518272	368 bp proximal
Rr518273	regulatory region 518273	1082 bp proximal
Rr518274	regulatory region 518274	1336 bp proximal
Tssr139047	transcription start site region 139047	926 bp upstream
Tssr139048	transcription start site region 139048	977 bp upstream
Tssr139049	transcription start site region 139049	1088 bp upstream
Tssr139050	transcription start site region 139050	1229 bp upstream
Tssr139051	transcription start site region 139051	1242 bp upstream
Tssr139052	transcription start site region 139052	1273 bp upstream
Tssr139053	transcription start site region 139053	1302 bp upstream
Tssr139054	transcription start site region 139054	1360 bp upstream
Tssr141826	transcription start site region 141826	1256 bp downstream