rs4207195 SNP Detail

Summary

• ID
  rs4207195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77125787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTGGTAA TCATGTGAGT GTCTACATGA GCTCTTTTGT
  CATTTCCACA TCTGCAGGCA CATAATATAA AGAAAACATG TTACTATTCT GTCCTGAACG
  Y
  TGTTTGATTT AATGTGAAAA AGTATTGTTT TAAATTCACT GAGTCAAGCA ATACCTACTC
  AGAAAGAACA CTAGGGGGTT ACCTTCGGTT TACTTTACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369789	mCV25161224_74554448	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss39440029	mCV25161224	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148391577	ENSMUSSNP1394645	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss325255102	CHEV_16_77329144	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207195					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77125787 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	within coordinates
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	429 bp upstream
Rr518272	regulatory region 518272	within coordinates
Rr518273	regulatory region 518273	452 bp proximal
Rr518274	regulatory region 518274	706 bp proximal
Rr518275	regulatory region 518275	1901 bp proximal
Tssr139047	transcription start site region 139047	296 bp upstream
Tssr139048	transcription start site region 139048	347 bp upstream
Tssr139049	transcription start site region 139049	458 bp upstream
Tssr139050	transcription start site region 139050	599 bp upstream
Tssr139051	transcription start site region 139051	612 bp upstream
Tssr139052	transcription start site region 139052	643 bp upstream
Tssr139053	transcription start site region 139053	672 bp upstream
Tssr139054	transcription start site region 139054	730 bp upstream
Tssr141826	transcription start site region 141826	626 bp downstream