rs4207196 SNP Detail

Summary

• ID
  rs4207196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77126269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACTGCAG CCTGAGTTCC CCGGAGCAAG GCTGCTTCTC
  TCCACCCACT CCTCACCAAG AACTCCTGAA CTTGAGAGTG GACGACTTCA AAGCTAGCTC
  Y
  CACAGACTCA CCTGGAAAAG AGTTCAGCTG CGCGTTCATT GAACCGAGAG GCCAGATCAC
  CTATGTGAGG CGGTGGGAAC CATATGGAGA TTTATATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369790	mCV25161225_74554930	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C
ss39469920	mCV25161225	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148391579	ENSMUSSNP4960450	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325255103	CHEV_16_77329626	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207196					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77126269 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	within coordinates
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	31 bp distal
Rr518273	regulatory region 518273	within coordinates
Rr518274	regulatory region 518274	224 bp proximal
Rr518275	regulatory region 518275	1419 bp proximal
Tssr139047	transcription start site region 139047	136 bp downstream
Tssr139048	transcription start site region 139048	28 bp downstream
Tssr139049	transcription start site region 139049	4 bp downstream
Tssr139050	transcription start site region 139050	117 bp upstream
Tssr139051	transcription start site region 139051	130 bp upstream
Tssr139052	transcription start site region 139052	161 bp upstream
Tssr139053	transcription start site region 139053	190 bp upstream
Tssr139054	transcription start site region 139054	248 bp upstream
Tssr141826	transcription start site region 141826	144 bp downstream